Page tree

Versions Compared


  • This line was added.
  • This line was removed.
  • Formatting was changed.


  • ImageJ and Variants - One of the most commonly used free image analysis programs. Has a large and active development community.
  • Nikon Viewer - Free viewer for Nikon's file formats.
  • CellProfiler - A free, open source image analysis tool designed for analysis of image-based screens.
  • Allen Cell Explorer - Resources from Allen Institute for Cell Science. Includes the Cell Feature Explorer, Cell Catalog, and Allen Cell Structure Segmenter.
  • Napari - Multi-dimensional image viewer for python
  • IOCBioMicroscope - A free, open source Lucy-Richardson deconvolution tool, written in Python.
  • Farsight Toolkit - Sophisticated packages for image alignment, segmentation, and neuron / vessel tracing, among other things.